Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
en (FBgn0000577) TF
 
(-1.31/-4.01/-0.51)

Factor activity

Additional information

en [FlyBase] | en [FlyMine] | en [BDGP]

H. sapiens orthologues1

HOXD13 (HGNC:5136, ENSG00000128714), HOXA13 (HGNC:5102, ENSG00000106031), HOXC13 (HGNC:5125, ENSG00000123364), HOXB13 (HGNC:5112, ENSG00000159184)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAGCGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCAACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATCCGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCTGCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAGTGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCATCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAATCAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACATTGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCGCCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCCAACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGATGGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGACTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGGCAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACGGGCCAACTTCCTTAACTGCTTCAATCCGGCTGCCTATCCCAGGATACACGAGGAAATCGTGCAGAGTCGGCTGCGCAGGAGTGCAGCCAATGCCGTCATCCCGCCGCCCATGAGCTCCAAGATGAGCGATGCCAATCCAGAGAAATCTGCTCTGGGATCCCTGTGCAAGGCGGTCTCGCAGATCGGACAACCTGCTGCCCCTACGATGACCCAACCTCCGCTGAGTAGCAGTGCCAGCAGCTTGGCCAGTCCGCCACCCGCCTCCAATGCCTCGACCATTAGCAGCACCTCTTCCGTGGCCACCAGCTCGAGCTCCTCCTCGTCGGGTTGCTCCTCGGCGGCCAGTTCCTTGAACTCCTCGCCCAGTAGCCGACTGGGAGCCAGTGGATCCGGAGTCAATGCCAGCAGTCCCCAGCCGCAGCCAATCCCGCCGCCATCCGCCGTTAGCCGAGATTCCGGAATGGAGTCCTCGGATGACACGCGTTCCGAGACGGGATCCACCACCACAGAGGGCGGCAAGAACGAGATGTGGCCCGCCTGGGTGTACTGCACCCGCTACAGCGATCGTCCCAGCTCAGGACCCCGCTACCGCCGCCCCAAACAGCCAAAGGACAAGACCAACGACGAGAAGCGTCCACGCACCGCGTTCTCCAGCGAGCAGTTGGCCCGCCTTAAGCGGGAGTTCAACGAGAATCGCTATCTGACCGAGCGGAGACGCCAGCAGCTGAGCAGCGAGTTGGGCCTGAACGAGGCGCAGATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGTCGACGGGCTCCAAAAATCCGCTGGCACTGCAGCTGATGGCCCAGGGATTGTACAACCACACCACCGTGCCGCTGACCAAGGAGGAGGAGGAGCTCGAGATGCGCATGAACGGGCAGATCCCC

CDS AA Sequence2

MALEDRCSPQSAPSPITLQMQHLHHQQQQQQQQQQQMQHLHQLQQLQQLHQQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAALQQRLSGSGSPASCSTPASSTPLTIKEEESDSVIGDMSFHNQTHTTNEEEEAEEDDDIDVDVDDTSAGGRLPPPAHQQQSTAKPSLAFSISNILSDRFGDVQKPGKSMENQASIFRPFEASRSQTATPSAFTRVDLLEFSRQQQAAAAAATAAMMLERANFLNCFNPAAYPRIHEEIVQSRLRRSAANAVIPPPMSSKMSDANPEKSALGSLCKAVSQIGQPAAPTMTQPPLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSSRLGASGSGVNASSPQPQPIPPPSAVSRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSDRPSSGPRYRRPKQPKDKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKSTGSKNPLALQLMAQGLYNHTTVPLTKEEEELEMRMNGQIP

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.