Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
pb (FBgn0051481) TF
 
(-0.23/-0.90/0.22)

Factor activity

Additional information

pb [FlyBase] | pb [FlyMine] | pb [BDGP]

H. sapiens orthologues1

HOXB3 (HGNC:5114, ENSG00000120093), HOXA3 (HGNC:5104, ENSG00000105997), HOXD3 (HGNC:5137, ENSG00000128652)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGCAAGAAGTCTGCAGCTCCTTGGACACGACCTCAATGGGCACCCAAATCAAATCGGAATCTCCACTCAACCCGCTGCAGGTGCAAACTGGACAGACGTCCCTGCCAGTGGGTGGTTGCGGTGGTGCGGGCGTCGTGGGTGGTGTGGGTGGCGTGGGAGTGAGTGTTGGTCAGCCTGGTATCGGACAGCAGGGGGTGCCACCTGTGCCGTCGGTGCTCATGGTCAACAAGATGACCCCGAACTGTGATAAACGGAGCGCGGACACGGCCTATTGGATGACAGCATCCGAGGGCGGGTTCATCAATTCGCAGCCGTCGATGGCTGAATTCCTCAACCACTTGAGTCCGGAGAGTCCCAAAATCGGAACACCTGTTGGATCCGGCGCCATTGGCGGAGTAGGCGTCAACGTTAATGTCAATGTCGGCGTCGGAGTCGGATATCCGGTTGGCGTTGTCCCTCAAACGCCGGATGGAATGGACTCGGTGCCGGAGTATCCCTGGATGAAGGAGAAGAAGACATCCCGCAAGAGCAGCAACAACAACAATCAGGGTGATAACTCCATTACTGAATTCGTTCCAGAAAACGGCCTGCCCCGACGACTCCGCACCGCATACACCAATACCCAGCTGCTGGAGCTGGAAAAGGAATTCCATTTCAATAAATATTTATGCCGCCCAAGGAGGATCGAGATAGCAGCCAGCCTGGACCTTACGGAGCGACAGGTAAAAGTTTGGTTCCAAAACCGCCGCATGAAGCACAAGAGGCAAACGCTCTCGAAAACGGACGACGAGGACAACAAGGACAGCCTCAAAGGTGACGATGATCAGTCCGATAGTAACTCCAATTCGAAGAAATCGTGTCAAGGCTGCGAACTGCCATCCGATGATATACCCGATTCCACGTCAAATTCCCGGGGTCACAACAACAACACGCCGAGCGCCACCAACAATAACCCGAGTGCTGGGAACCTGACTCCAAACTCGTCCCTGGAAACGGGCATCTCCTCGAACCTGATGGGCAGCACCACCGTATCCGCCTCAAATGTGATCAGCGCCGACTCCAGTGTGGCATCTAGTGTTAGCCTGGACGAGGATATTGAGGAGAGCAGCCCCATAAAGGTGAAGAAGAAAGACGATGGTCAGGTCATCAAAAAGGAGGCGGTCTCCACCTCGTCGAAAGCCTCGCCTTTTGGTTATGAAAACTCCACTCCCAGTCTGGTCAGTTTTCGACGGGATTCAGATGCCTCCGCTGTCGGAAATGCACCCACCAGCAAGGCGGTCGGCAAGAAACGCTTTCAGAGTGCCGCCAATGCCATTGCCACGCCCACGCCCCTTTCGGACAGTAATAGTGGAAACGGGAGTGGAGGCGGCCCAGCTGGCGGCTACTTTCCAGGCTATTATCCTAGTCCCAAGCAGCAGCAGCAAGTGCAGCAGCAGCAACTGCACCCGCAACAGCAGCAGCTGCCGCAGCAGCAGCCGCAAGACTACTACGGCAAATACGATATCGAATTCGCCGCCTCGCCGCACCACAATCCGCACAACAAGCAGCAGGCGCTGCACGGCGAGTACCTAAGTCCCAAGCCAAGTTCAGCCAATTTCCACCAAAACAGTCAACAGCAGCAGCAGAACGACCACTTCTATTACAACTACAACGACACCAACGGCACTCCGTACTTGAACCACCAGCAGCAGCACCACCACCACGCACAGCACCACCAGCAGCAGCAGCACCACCAAAACCATGTGGCCGACTTTGAGGGGCCTGTCAACGGACCCAGCAACTTTAACAATGGCGCCTACTACGACAACATGAGTTTTCAACAACAGGCTCAAGCTCACCAACACCAAACGGTGGTCTTCCAACAGCAGCAGCCTCACCAGCCAGCGGCGATTAACCACCAGCACATGCATCACCTGGGAAATGGGGAGACATACAGTGCTCTAGGCCTACAGATGGAGAACTGCGAGGGCTACAACAACTTTGGGGCCGCCGGAACCGGTGGTGGGTACTACGAGGCGGGTCAGCAACCTCCTATTCCGGCCACCCACGGCCATGGACACCATCCCCACCACGTGCAGGTGCCGGCTCAGGCGCATGCCCCCATCCACGCCCACCACAATTCTGCCGCGATTCCCGGAGGAGTGGGAGTTGGACCGCCCCCCTCGCATATCCATGGATTCGCCATCAATGGGGGACCGGCTGTTCAGGGCCAGGCATTCGGAAACAACGGAAGCACTGCAGCTGGGACCGCTGCGATCAGTGGTCTGGAGAACTCCAATAGCTCGGACTTCAACTTTCTGAGCAACTTGGCCAACGATTTTGCGCCGGAATACTACCAACTCAGT

CDS AA Sequence2

MQEVCSSLDTTSMGTQIKSESPLNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSSKASPFGYENSTPSLVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTPLSDSNSGNGSGGGPAGGYFPGYYPSPKQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLSPKPSSANFHQNSQQQQQNDHFYYNYNDTNGTPYLNHQQQHHHHAQHHQQQQHHQNHVADFEGPVNGPSNFNNGAYYDNMSFQQQAQAHQHQTVVFQQQQPHQPAAINHQHMHHLGNGETYSALGLQMENCEGYNNFGAAGTGGGYYEAGQQPPIPATHGHGHHPHHVQVPAQAHAPIHAHHNSAAIPGGVGVGPPPSHIHGFAINGGPAVQGQAFGNNGSTAAGTAAISGLENSNSSDFNFLSNLANDFAPEYYQLS

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.