Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Rbf (FBgn0015799) cofactor
 
(-1.16/-2.89/-0.44)

Factor activity

Additional information

Rbf [FlyBase] | Rbf [FlyMine] | Rbf [BDGP]

H. sapiens orthologues1

RBL1 (HGNC:9893, ENSG00000080839), RBL2 (HGNC:9894, ENSG00000103479)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGAGCGAGCCTGACCCGCAGGAACTGGGAGCTGAGGTGGTCAGCGGATTGGTGGCGACCAGCGACGACCGCCTGGAGATGATCAACGCCGAGTACACGAACCTATGCCGGGATCTAAACATGGATCGGCAGACAGAGCTGCAGGGCTACGAGACGTACTTAGAGGTGTCCCAGAGGTGCTCCATGGAGGGCACAGCCAGCCACTGGATGTGCTGCGCCATTTACACGGCCTGCCGAAGAACCAGCACACCCACGGTGACTGGCCAGAATGCAGTGGTCAAGGGTAATTGTGTGTCCTTAAACAATTTGCTGCGCTGCTGCAAGATGAGCATCTACGAGTTCAAGACCAAAATTAAGCAGTGGTGCGACATGGCCAACCTGCCTCAGGAGTTTGTCAACGAGATTGAGGATCTGGACCGCAAGTTCAGCATTACATTCATGCTGCACAAGCGTTTCCGCATTATTATGGACATGATCTTCTCGTGCCCGCCCAACGAGAAGAAGCACTCCAAGTACATTTCTCTGCATGGCAACCACGCCCACGGAAAGTGCTCGTACATCAAGCTGGACGACATCTGCTGGCGCCTGTTTCTCTGCGCCAAGAACCAGAAGCCGAGCAACACCGTGGACCTGGTGACATCCTACAATCTGATGATTTGCTGCATAGACCTGATATACAACAATGTGCTGGCCGAGAAGCGCACCGATCTCATCAACCCCAAATTCGAGGGCCTGCCGAGCAACTGGACGGAGCTGGACTTTCGTCACAATCCGCACTGCATTTTGTCCAACTTCTGTGACATGACCGAGGAGGCTAAAGCCATGAAGGCCACCACTTTCCGCCAGATCATGTCGAGCTTCTTTCAGGCTTCGACCATCTACGGCAACAAGGACACTATGTTAGGCCTATTGGCTAACGAAAACTTCGAGCGCAACCTAAAGTCCCTCAACATCAGCTACGAGCAGTACGTCCTCAGCGTCGGCGAATTCGACGAACGCATTCTGAGTGCCTACGATGCGGGGGAACACACTGCCCTCAACGACCAGTCCCTGCGTCCGCCGGTTACTCCGCTTACCCGCAAGCAAGATCTGCCTGCGCAGCCCGCGATGGCTGGCGATAAATTTGAGCCCGTCCGCAACGCCACTAACAACGTGAAGCAGCTGAGCGCCTTCGGACGGATCACAGAACCCACGGACTTTGTCAAGCAAGCTGGCGAAGAGGTAATAGCCAAGCTGCTTAGCATCATCGAGGAGATCGAGCAGAAATTCCTCGCCAAGTACCCGTCAACGGAGGCGAAGAGTCGCTTCCAACTAGCGAAGTCCTTCTTCTTCTACCTGCTCGACCAGATCCTGCAGGCGGAAATTCGGAACAAGCCCGACATCGATCTCAAGCGACTGCTGGTGCAGAAGGTCTCCCTGGTCATCTTTAACATCACGCTGATGGCCTGCTGCGTGGAGCTGGTGCTGGAGGCCTACAAAACGGAGCTCAAGTTCCCGTGGGTGCTCGACTGTTTCAGTATTAGCGCGTTCGAGTTCCAAAAGATCATCGAGATCGTGGTGCGGCACGGCTCGCACGAAGGCTGTTTGAACCGGTCGCTGATAAAGCACCTTAACTCCATCGAGGAGACGTGTCTGGAGCGGCTGGCCTGGGCGAGGAACTCGACCGTCTGGGAAATGATCGCCTCCGCCCAACTGCCGTTGCCCACGTGGCTCATGGTTAACCTCGACCGCGCCGCCGGCCCCTTGCAGATATTCCTGCGCAAGGTGTACCTGCTTGGCTGGTTGCGCATCCAGAAGCTGTGCTCGGAGCTGTCACTGTGCGAGAAGACGCCCGAGAGCATCTGGCACATCTTTGAGCACTCGATCACCCACGAGACGGAATTGATGAAGGACCGCCACCTCGATCAAAATATTATGTGTGCAATATATATCTACATAAGAGTAAAGCGAATGGAGGACCCCAAGTTCAGTGACATTATGCGGGCATATCGCAACCAGCCGCAGGCGGTGAACAGCGTCTACCGCGAGGTGTTCATCGACATCAACGAGGACGGGGAGCCAAAGGTGAAGGACATCATTCACTTTTACAACCACACTTACGTGCCGCTGATGCGGCAGTTCGTCATCGACTACCTAAACGTAACTCCGGACGTGAGTGGCCGGGCTTCGGATCTACAGCTCTCCCCGCATCCGAAGGAACGGGCCGCCCAGCCCAAGAAGGTAACCCAGAGCCACTCGCTGTTCGTGTCGCAGATGTCCAAGAACGAGATACAGCAGTCGCCCAACCAGATGGTCTACAGTTTTTGCCGCAGCCCCGCCAAGGACCTTCAGGCTATGAACGAAAAGGTACGCGGCGGCAAGCGCATGCTGAGCTTTGGCGACGAGCCCGGACTAGGTACAATGGCAGAGACGAAGCGCTCGAAAATCAGCCAGGTCAAGGCCGTCATGGACGACCCTGAACTGCAGTCAGCCGAGCAGCAGACTGCTGTTACCACGGAAGGTTGCGTAGGGGGCGAAGGAGGAGAACACGAGACA

CDS AA Sequence2

MSEPDPQELGAEVVSGLVATSDDRLEMINAEYTNLCRDLNMDRQTELQGYETYLEVSQRCSMEGTASHWMCCAIYTACRRTSTPTVTGQNAVVKGNCVSLNNLLRCCKMSIYEFKTKIKQWCDMANLPQEFVNEIEDLDRKFSITFMLHKRFRIIMDMIFSCPPNEKKHSKYISLHGNHAHGKCSYIKLDDICWRLFLCAKNQKPSNTVDLVTSYNLMICCIDLIYNNVLAEKRTDLINPKFEGLPSNWTELDFRHNPHCILSNFCDMTEEAKAMKATTFRQIMSSFFQASTIYGNKDTMLGLLANENFERNLKSLNISYEQYVLSVGEFDERILSAYDAGEHTALNDQSLRPPVTPLTRKQDLPAQPAMAGDKFEPVRNATNNVKQLSAFGRITEPTDFVKQAGEEVIAKLLSIIEEIEQKFLAKYPSTEAKSRFQLAKSFFFYLLDQILQAEIRNKPDIDLKRLLVQKVSLVIFNITLMACCVELVLEAYKTELKFPWVLDCFSISAFEFQKIIEIVVRHGSHEGCLNRSLIKHLNSIEETCLERLAWARNSTVWEMIASAQLPLPTWLMVNLDRAAGPLQIFLRKVYLLGWLRIQKLCSELSLCEKTPESIWHIFEHSITHETELMKDRHLDQNIMCAIYIYIRVKRMEDPKFSDIMRAYRNQPQAVNSVYREVFIDINEDGEPKVKDIIHFYNHTYVPLMRQFVIDYLNVTPDVSGRASDLQLSPHPKERAAQPKKVTQSHSLFVSQMSKNEIQQSPNQMVYSFCRSPAKDLQAMNEKVRGGKRMLSFGDEPGLGTMAETKRSKISQVKAVMDDPELQSAEQQTAVTTEGCVGGEGGEHET

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.