Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
UbcD6 (FBgn0004436) cofactor
 
(-0.17/-2.64/0.51)

Factor activity

Additional information

UbcD6 [FlyBase] | UbcD6 [FlyMine] | UbcD6 [BDGP]

H. sapiens orthologues1

UBE2A (HGNC:12472, ENSG00000077721), UBE2B (HGNC:12473, ENSG00000119048)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTCAACACCCGCACGCAGACGTCTTATGAGAGATTTTAAAAGACTTCAAGAGGATCCACCTACGGGTGTCTCGGGTGCTCCAACAGATAATAATATTATGATATGGAATGCTGTGATTTTTGGTCCACACGACACACCCTTCGAAGACGGAACATTTAAGTTAACCATAGAATTTACGGAAGAGTACCCAAACAAACCGCCAACGGTTCGATTTGTATCGAAAGTATTTCATCCCAATGTATACGCAGATGGTGGAATATGCTTGGACATATTGCAGAACCGCTGGAGTCCCACGTACGATGTGTCAGCCATATTAACATCCATACAGTCACTGCTGAGCGATCCCAATCCCAACTCACCGGCTAACTCCACCGCCGCCCAGCTGTATAAAGAAAATCGGCGCGAGTACGAGAAGCGTGTGAAAGCCTGCGTTGAGCAGAGTTTCATCGAT

CDS AA Sequence2

MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSFID

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.