Factors @ Stark Lab

Gene Name	Type	Activity (log2) in S2 cells (avg/min/max)	Cluster	Data available
Gene Name	Type	Activity (log2) in S2 cells (avg/min/max)	Cluster	S2	Kc167	BG3	OSC	HeLa
Clk (FBgn0023076)	TF	(5.55/2.36/7.51)	8	◼	◼	◼	◼	◼

Factor activity

Celltype:
S2
Kc167
BG3
OSC
HeLa

Additional information

Clk [FlyBase] | Clk [FlyMine] | Clk [BDGP]

H. sapiens orthologues¹

CLOCK (HGNC:2082, ENSG00000134852), NPAS2 (HGNC:7895, ENSG00000170485)

Functionally similar transcription factors and cofactors

Similarity:

Euclidean distance

TF	Euclidean distance (rank)
MTF-1	1.925 (1)
CG1233	3.481 (2)
Sox14	3.630 (3)
vfl	4.626 (4)
tx	4.773 (5)

All TFs

Cofactor	Euclidean distance (rank)
MED25	5.596 (1)
nej	6.034 (2)
CG7154	7.541 (3)
MED15	8.399 (4)
Lpt	11.822 (5)

All cofactors

Pearson correlation

TF	Pearson correlation (rank)
CG1233	0.952 (1)
Sox14	0.948 (2)
MTF-1	0.946 (3)
vfl	0.920 (4)
Dif	0.914 (5)

All TFs.

Cofactor	Pearson correlation (rank)
nej	0.939 (1)
CG7154	0.854 (2)
MED25	0.836 (3)
CG17293	0.785 (4)
CG34376	0.754 (5)

All cofactors.

CDS DNA Sequence²

ATGGACGACGAGAGCGACGACAAGGATGATACAAAAAGGAAATCGCGTAATCTCAGCGAGAAGAAGCGACGAGATCAGTTCAACTCGCTGGTCAACGATCTCAGCGCCTTGATATCCACATCCAGCAGAAAGATGGATAAGTCCACGGTCCTGAAGTCCACGATAGCCTTCCTGAAAAATCATAATGAGGCCACCGATCGCTCCAAGGTTTTCGAAATACAACAGGACTGGAAGCCTGCGTTCCTCAGCAATGACGAATACACTCACCTCATGCTGGAGTCTCTCGATGGTTTTATGATGGTCTTCAGCAGCATGGGCTCCATCTTTTACGCCTCGGAAAGTATTACCTCCCAGCTGGGCTATCTGCCGCAAGATTTGTACAACATGACCATTTATGACCTGGCCTATGAGATGGACCATGAGGCGCTGCTGAATATCTTTATGAATCCCACACCGGTAATCGAGCCCAGACAGACGGACATAAGTTCCAGTAACCAGATCACATTCTACACTCATTTGAGACGCGGCGGGATGGAGAAAGTGGATGCCAATGCCTACGAGTTGGTCAAATTCGTGGGCTACTTTCGTAACGATACCAATACTTCGACGGGTTCCAGTTCGGAGGTTTCGAATGGCTCAAATGGACAACCTGCGGTGCTGCCGCGCATCTTCCAGCAGAATCCCAATGCCGAGGTGGACAAAAAGCTGGTTTTCGTGGGCACTGGACGCGTACAGAATCCCCAACTGATCAGGGAAATGAGCATTATTGATCCCACAAGTAATGAGTTCACTTCGAAACACAGCATGGAGTGGAAGTTTTTGTTTCTGGATCACCGTGCTCCTCCGATCATTGGCTATATGCCCTTCGAGGTTCTGGGGACGTCCGGCTATGATTATTACCACTTTGATGATCTGGACAGTATTGTGGCGTGCCATGAAGAGCTAAGGCAAACGGGTGAGGGCAAGTCTTGCTACTACCGATTCCTTACGAAGGGCCAACAGTGGATATGGTTGCAAACGGACTACTATGTGAGCTATCACCAGTTCAATTCCAAACCAGACTACGTGGTCTGCACCCATAAGGTTGTCAGCTATGCCGAGGTTCTGAAGGATAGTCGAAAGGAGGGCCAAAAATCGGGAAATAGCAACAGCATCACCAACAATGGGAGCAGTAAGGTCATAGCCTCCACGGGAACTAGCAGCAAATCCGCATCTGCCACCACAACACTGAGGGACTTCGAGCTGAGCAGCCAAAATCTGGATAGCACATTGCTCGGAAATAGTCTGGCCAGTTTGGGCACTGAAACAGCAGCCACTTCACCCGCCGTGGACTCGTCGCCCATGTGGTCAGCGTCGGCTGTCCAACCGTCGGGATCATGCCAAATAAATCCCCTGAAGACATCGCGTCCCGCTTCGAGTTATGGCAATATCAGCTCCACAGGAATATCGCCGAAGGCCAAACGAAAGTGCTACTTCTACAACAACCGGGGGAATGACTCGGATTCAACGTCCATGTCGACGGATTCGGTCACCAGCCGGCAGTCCATGATGACGCACGTCAGTTCGCAAAGCCAACGGCAGCGATCGCATCACCGAGAACACCATCGAGAAAATCATCACAATCAGTCACATCATCACATGCAGCAACAGCAGCAGCATCAGAACCAGCAGCAGCAACATCAGCAGCACCAGCAACTGCAACAGCAGCTGCAACATACAGTGGGTACTCCGAAAATGGTGCCTCTCCTGCCGATTGCGTCCACACAAATAATGGCTGGAAATGCGTGTCAGTTTCCCCAACCCGCCTATCCGCTTGCTAGTCCCCAACTGGTGGCACCGACATTTCTTGAGCCGCCGCAATATCTCACCGCCATTCCCATGCAGCCAGTGATCGCTCCGTTTCCGGTGGCGCCAGTGCTTTCCCCACTTCCGGTGCAGTCACAAACGGATATGCTGCCCGATACGGTGGTTATGACGCCAACACAGAGTCAGTTGCAGGATCAATTGCAGCGGAAGCACGACGAACTGCAAAAACTGATCCTCCAGCAACAGAATGAGCTGAGGATCGTATCAGAGCAGCTCCTCCTATCCCGCTACACATATCTGCAGCCCATGATGTCGATGGGATTCGCACCTGGCAACATGACAGCAGCAGCGGTGGGTAATTTGGGAGCCAGTGGCCAACGTGGACTGAATTTCACCGGCAGCAATGCCGTGCAGCCGCAATTCAATCAGTATGGATTTGCACTGAACTCGGAGCAGATGCTTAACCAGCAGGATCAGCAGATGATGATGCAGCAGCAGCAGAATCTGCACACGCAGCACCAGCACAATCTCCAGCAGCAACATCAGAGCCACTCACAGTTGCAGCAACATACCCAGCAGCAACATCAGCAGCAGCAGCAACAACAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAGTTGCAGCTGCAACAACAAAATGATATTTTACTGCGTGAGGATATCGATGATATAGACGCCTTTCTCAATCTGTCCCCCCTGCACTCATTGGGCTCGCAATCCACCATTAATCCCTTCAACTCCAGCAGCAATAACAACAATCAAAGCTACAATGGAGGCAGTAATCTGAATAATGGCAACCAGAACAACAACAATCGCAGTTCAAATCCTCCGCAAAATAATAACGAGGACTCGCTGTTGTCCTGCATGCAGATGGCCACCGAATCGAGTCCTTCGATCAACTTTCACATGGGCATCAGCGATGATGGCTCCGAAACGCAGAGCGAGGACAACAAGATGATGCACACTTCCGGCAGCAATCTGGTGCAGCAGCAACAGCAGCAGCAGCAACAACAACAAATCCTGCAGCAGCATCAACAGCAGTCAAATAGCTTCTTCAGTTCGAATCCCTTTCTCAACAGTCAGAATCAGAATCAAAACCAATTGCCAAACGATCTGGAAATATTGCCATACCAGATGTCCCAAGAGCAATCACAGAATCTATTCAACTCGCCACACACAGCCCCAGGCAGTAGTCAA

CDS AA Sequence²

MDDESDDKDDTKRKSRNLSEKKRRDQFNSLVNDLSALISTSSRKMDKSTVLKSTIAFLKNHNEATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFSSMGSIFYASESITSQLGYLPQDLYNMTIYDLAYEMDHEALLNIFMNPTPVIEPRQTDISSSNQITFYTHLRRGGMEKVDANAYELVKFVGYFRNDTNTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVDKKLVFVGTGRVQNPQLIREMSIIDPTSNEFTSKHSMEWKFLFLDHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGEGKSCYYRFLTKGQQWIWLQTDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKEGQKSGNSNSITNNGSSKVIASTGTSSKSASATTTLRDFELSSQNLDSTLLGNSLASLGTETAATSPAVDSSPMWSASAVQPSGSCQINPLKTSRPASSYGNISSTGISPKAKRKCYFYNNRGNDSDSTSMSTDSVTSRQSMMTHVSSQSQRQRSHHREHHRENHHNQSHHHMQQQQQHQNQQQQHQQHQQLQQQLQHTVGTPKMVPLLPIASTQIMAGNACQFPQPAYPLASPQLVAPTFLEPPQYLTAIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQQNELRIVSEQLLLSRYTYLQPMMSMGFAPGNMTAAAVGNLGASGQRGLNFTGSNAVQPQFNQYGFALNSEQMLNQQDQQMMMQQQQNLHTQHQHNLQQQHQSHSQLQQHTQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQLQQQNDILLREDIDDIDAFLNLSPLHSLGSQSTINPFNSSSNNNNQSYNGGSNLNNGNQNNNNRSSNPPQNNNEDSLLSCMQMATESSPSINFHMGISDDGSETQSEDNKMMHTSGSNLVQQQQQQQQQQQILQQHQQQSNSFFSSNPFLNSQNQNQNQLPNDLEILPYQMSQEQSQNLFNSPHTAPGSSQ

¹ H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
² Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.