Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Hrb87F (FBgn0004237) cofactor
 
(-0.35/-3.15/0.41)

Factor activity

Additional information

Hrb87F [FlyBase] | Hrb87F [FlyMine] | Hrb87F [BDGP]

H. sapiens orthologues1

HNRNPA1 (HGNC:5031, ENSG00000135486), HNRNPA1L2 (HGNC:27067, ENSG00000139675), HNRNPA3 (HGNC:24941, ENSG00000170144), HNRNPA2B1 (HGNC:5033, ENSG00000122566)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGCGGAACAAAACGATTCCAACGGAAACTACGACGATGGTGAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATCGGCGGACTGGACTACCGCACCACCGATGATGGCCTGAAGGCTCACTTCGAGAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGAAGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATCGACAATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGAGCCCAAGAGGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAGCCACGGTAAAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAAGAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAACATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTGAGTTCGATGACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCACTCCATCAAGAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGATATGGATCGACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCGGTCGCGGTGGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGCCAGAACAGACAGAACGGTGGGGGCAACTGGGGCGGAGCTGGCGGCGGCGGAGGATTCGGCAACAGCGGCGGTAACTTTGGAGGCGGTCAGGGCGGCGGCTCTGGCGGTTGGAATCAGCAAGGCGGAAGCGGAGGTGGTCCATGGAATAACCAGGGTGGCGGCAACGGCGGCTGGAACGGTGGTGGTGGTGGCGGCGGCTACGGCGGCGGAAACAGCAATGGCAGCTGGGGCGGTAACGGTGGTGGAGGTGGTGGTGGCGGTGGCTTCGGAAATGAATACCAGCAGAGCTACGGCGGCGGTCCACAGCGCAACAGCAACTTTGGCAACAACCGTCCAGCTCCTTACAGTCAAGGAGGTGGTGGTGGAGGATTCAACAAGGGTAACCAGGGTGGAGGTCAAGGCTTTGCTGGCAACAACTACAACACCGGAGGTGGTGGCCAGGGTGGAAATATGGGAGGCGGCAATAGACGTTAC

CDS AA Sequence2

MAEQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQGGGQGFAGNNYNTGGGGQGGNMGGGNRRY

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.