Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
cad (FBgn0000251) TF
 
(-0.48/-2.44/0.45)

Factor activity

Additional information

cad [FlyBase] | cad [FlyMine] | cad [BDGP]

H. sapiens orthologues1

CDX2 (HGNC:1806, ENSG00000165556), CDX1 (HGNC:1805, ENSG00000113722)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGTTTCGCACTACTACAACACACTGCCCTACACACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAGCCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTTCCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCCACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCCTCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGTTCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATCATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGCGGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGGCGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAGGACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTGCCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGCGCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTGCCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCCACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGACATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATCCAGCACAACCACAACCAGGCAAAACCCGCACCAAGGATAAGTACCGCGTGGTGTACACCGACTTCCAGCGCCTGGAGCTGGAGAAGGAGTACTGCACCTCCCGCTACATCACCATCCGGCGGAAGAGCGAGCTCGCCCAGACGCTGTCGCTGTCGGAGCGCCAGGTTAAGATCTGGTTCCAGAACCGCCGCGCCAAGGAGCGCAAGCAGAACAAGAAGGGTAGCGATCCGAACGTGATGGGCGTGGGAGTGCAGCATGCGGACTACAGCCAGCTGCTGGACGCCAAAGCGAAGCTGGAGCCGGGCCTGCACCTGTCCCACTCGCTGGCCCACTCGATGAACCCCATGGCGGCGATGAACATTCCCGCCATGCGCCTGCATCCCCACCTGGCCGCCCACAGCCACTCCTTGGCGGCGGTGGCGGCGCACTCACACCAGCTGCAGCAGCAGCACAGTGCGCAGATGTCCGCTGCGGCGGCAGTGGGCACGCTCTCGATG

CDS AA Sequence2

MVSHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVDSSHAAHHAAAAHQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHSLAAVAAHSHQLQQQHSAQMSAAAAVGTLSM

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.