Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Su(var)3-3 (FBgn0260397) cofactor
 
(-1.15/-3.86/-0.48)

Factor activity

H. sapiens orthologues1

KDM1A (HGNC:29079, ENSG00000004487)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGAAACCCACCCAGTTCGGAGGCAGTAGCTCCAAGATGACCGAGCCAATTGAGTATGTGACGCTAATTAGCGACGATTCCGATGGTGAGCCCACGCCCAAAAGAAACGTCAATCACCCGCCGTCGGCATTGTCAGCACCCAATCCTGGTCAGAAACAAAAGCACCCGGATGAGGACTCAAATGACGCACCTGCCACCAGCGATGAGCGACGCACAAGTAGGCGCAATCGGCCAAAAGTGGATTATAGTAACAGGCCTAGTGGAAGTGGAGACACCGCCTCCAATGACAAGTCAGGATCGGCATCCATGGGACCTAACAACCAGCAAGCAGAGCGTCGCAGCCAAAGCCAAACCCGCAAGTCAGAAGCCAATGCTACCTCCTCCTCCGTGTCCGGACCCAGTGCCGGAAATTCCAGACCGTCCCAGAACGGAGATTCCAAGGACCGGGATGCCGGCACGCCCACGGTTTTGTCTGGCCAAGAGGGCGCCGTCTTCCAATCTCGCCTGCCATTTAACAAAATGACACCCAACGAAGAGGCCTGCTTTCCGGACATCAGTCGCTCGGGCATTCTCGGCCATCGGGTATTCCTCAACATTCGTAACAGCCTCTTGCACATGTGGGTGGACAATCCCAAGATCCAGCTGAGCTTCGAGATCGCCCTGAAGAACCTGCCGCCGCCATTCGACAGCGAGCCCAGTTTGGTAAGGCGAGTACACTCGTTTCTGGAGCGTCATGGCTTCATTAACTTCGGCATCTTTAAGCGACTTAAGCCTATACCCGCCAAAAAGCTGGGCAAAGTCATAGTGATTGGGGCAGGGATCTCCGGCTTAGCAGTGGCACACCAGTTGCAGCAGTTCGGCATGGATGTGATCGTCTTGGAAGCGCGGGATCGGGTAGGGGGACGGATATCTACGTTTCGGAAGAACAGCTATATTGCCGATGTGGGAGCAATGGTGGTTACCGGCGTCTATGGCAATCCAATGACGATCCTCAGCAAGCAGATCGGTATGGACCTAGTTCCCATCCAGCAGACATGTCCACTTTACGGCCCAGATGGAAAGCCCGTGCCCAAGGAGAAGGATGACGTGATCGAGAGAGAATTTAACCGACTGCTGGAATCAGCCAGCTACCTGTCCCACCGCCTTGATTTTAACTACGCCGGCGATTGCCCAGTTTCGCTGGGCGATGCCTTGGAGTGGATAATCAGTATGCAGGAGATGCAGGTGATGCACAAACGGGGGCAGCACATGCAGGAGATCATAGCCACCCAAACGAAGATCATTGAACAGCGTCGTCGACTGAAAACCCTTAGAGATACCATCGGCAAACTAAAGAATGAGCACTTGGCAATGATCAACCAGCGGAAACCCAAAGGCACGGATGGCGATCTGAAATACTGTTACCAAGAGTTTAACATTCGGAACACCCAGATCAAAATGGAGGAAACGATCAGTACGTTTCACGATCTCCATGCCGAGGAAAAGCAGATGTTAGCCAAACTCCACGAACTGGAGCAGAACCGACCTAGCGATGTGTACCTCTCGTCCCGCGACCGCCTGATCTTGGACTGGCATTTTGCCAACTTGGAATTTGCTAATGCCACCCGACTAAATAACCTGTCGTTGAAGCACTGGGATCAGGACGATGACTTCGAGTTTATTGGCCACCACACAACTGTGCGGAACGGTTATTCATGTGTGCCTGTAGCTCTTACTGAAAACCTGGACATCCGTGTCAATAGCGCCGTCAAGGAGATAAAGTACGGCACCAAAGGTGTGGAAGTAGTGGCTGAAAACTTGAAGACATCCAATTCGCAGATGACATACAAGGCAGACCTTGTCGTCTGCACACTTACTCTGGGCGTCCTCAAAGTGGCGGTAGCACATAAGGAGTCACAGCAGAGTAACACAGTCAAGTTCGACCCGCCATTGCCGGACTGGAAACAGCAGGCCATCAAAAGGCTGGGATTTGGGAATCTCAATAAGGTTGTGCTCTGCTTCGATCGCATTTTTTGGGATCCCAACGCTAATCTCTTCGGACACGTGGGCAGCACGACGGCGAGTAGAGGAGAAATGTTTCTGTTCTGGAGTATAAGCTCATCTCCGGTGTTGCTCGCTCTAGTCGCCGGAATGGCAGCGAATCTGGTGGAGAGCGTGACGGATGACATCATAATCGGGCGTTGTATGTCGGTGCTAAAAAACATCTTCGGGAATACCTCTGTTCCACAACCCAAGGAAACAGTGGTAACGCGTTGGCGCAGCGATCCCTGGGCCCGTGGGTCGTACAGCTACGTATCCGTTGGTTCCTCGGGCAGTGACTACGATCTGCTGGCGGCGCCGGTCATTCCGCCGTCCAGTAAGGATGCGGAAGGATTGCCACGGCTATTCTTCGCGGGTGAGCATACGATACGGAATTATCCGGCCACTGTGCATGGAGCGTACTTGAGCGGATTGCGCGAGGCGGGACGTATTGCGGATTACTATCTCGGCTATCCAGAGGGAACACCGCCGGACATTGGCTACTCGGTGGCTGAGGCGGCCAATCTGGTGTCCGTGGGAAATGTTGTCAAGCTGCGCGACCTCTCGCCCAATCTATCTGACTCCTCCCCGTCGTCAAAGAAGTCGGAGGAGAATTCAAACTCAAACACTGCCGACTCTACGGAGCTACAG

CDS AA Sequence2

MKPTQFGGSSSKMTEPIEYVTLISDDSDGEPTPKRNVNHPPSALSAPNPGQKQKHPDEDSNDAPATSDERRTSRRNRPKVDYSNRPSGSGDTASNDKSGSASMGPNNQQAERRSQSQTRKSEANATSSSVSGPSAGNSRPSQNGDSKDRDAGTPTVLSGQEGAVFQSRLPFNKMTPNEEACFPDISRSGILGHRVFLNIRNSLLHMWVDNPKIQLSFEIALKNLPPPFDSEPSLVRRVHSFLERHGFINFGIFKRLKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFRKNSYIADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDCPVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIADYYLGYPEGTPPDIGYSVAEAANLVSVGNVVKLRDLSPNLSDSSPSSKKSEENSNSNTADSTELQ

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.