Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
exd (FBgn0000611) TF
 
(-0.45/-3.21/0.28)

Factor activity

Additional information

exd [FlyBase] | exd [FlyMine] | exd [BDGP]

H. sapiens orthologues1

PBX1 (HGNC:8632, ENSG00000185630), PBX3 (HGNC:8634, ENSG00000167081), PBX2 (HGNC:8633, ENSG00000204304)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCCCTCGATTCGCAACACCCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAGACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTAATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTTCAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCATATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTGGCATCACGGTCTCGCAAGTATCGAATTGGTTTGGCAACAAGCGTATTCGCTATAAGAAGAACATTGGTAAGGCACAGGAGGAGGCCAATTTGTATGCGGCCAAGAAGGCGGCTGGTGCTTCACCGTATTCCATGGCCGGTCCACCCAGCGGGACAACCACACCCATGATGTCACCCGCTCCGCCACAGGATTCCATGGGCTATCCAATGGGCTCCGGCGGATACGACCAGCAGCAACCGTACGACAACAGCATGGGCGGCTACGACCCAAATCTCCATCAGGATCTAAGCCCC

CDS AA Sequence2

MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVPSIRNTQEEEPPDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAIEHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPMMSPAPPQDSMGYPMGSGGYDQQQPYDNSMGGYDPNLHQDLSP

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.