Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Kdm2 (FBgn0037659) cofactor
 
(-0.91/-3.38/-0.23)

Factor activity

Additional information

Kdm2 [FlyBase] | Kdm2 [FlyMine] | Kdm2 [BDGP]

H. sapiens orthologues1

KDM2B (HGNC:13610, ENSG00000089094), KDM2A (HGNC:13606, ENSG00000173120)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTCCACCGCCGTTGAAACGGGGTCGTCGCCTGCCAAGAGCAATAGCAACAACAGTAGCAGTGGCGGCAACAACAACAACGGCAACGGCAATCTCAGTCCAAATGCAAAAGGCGTGCAGCGGCGTCAACTGCGCGAGAGGAAGCAGCGCAAGCTCTACCTGGAGGAATGGTCGCTGGGCGACGAGGATGGCGAGGGGACGCGGGGATTCAGCGTTGCCGAGAAGCTCGAATCTTCAAAGTTCGCGCAGGCGGGAATGGTGCGCGAGATGCGCGGATGCGATCTCACCGTAGCTTTCCTCCAACAGCACGGCTTTAACATCCCGCTGTTATTCCGGGACAAAGCGGGCTTAGGTTTACGAATGCCCGATCCGCAAGAGTTCACCGTGAACGATGTGCGACTGTGCGTGGGATCCAGGCGACTCCTCGATGTCATGGACGTGAACACGCAGAAGAACCTGCAGATGACCATGAAGGAGTGGCAGCAGTACTATGACAGTCCGCAGAAAGACCGTCTGCTAAACGTGATCTCTCTGGAGTTCTCGCACACCCGCCTGGACAGATTCGTTCAGAGTCCGGAGATCGTGCGCCAGATCGACTGGGTGGATGTGGTCTGGCCCAAGCAGCTTAAGGACGCCCAGCGGGAGGGCACCAATCTGCTAGGCGGCATGATGTACCCAAAGGTGCAGAAATACTGCCTGATGTCAGTGAAGAACTGCTACACGGATTTTCACATTGACTTCGGTGGGACTTCCGTTTGGTATCACATCTTAAGAGGAAGCAAAGTATTTTGGCTAATTCCACCCACGGACCGTAATCTGCAGTTGTATGAAAAGTGGGTTCTCTCTGGCAAACAGGCAGACATTTTCTTCGGAGATACAGTGGAGAAATGTGCCAGGGTTTATTTAACCGCGGGGAACACCTTCTTCATACCCACCGGCTGGATACACGCAGTCTACACGCCCACCCAATCCCTCGTCTTTGGAGGAAATTTCCTGCACTCCTTCGGGATAGTGAAGCAACTTAAAACCGCCAGTGTTGAGGATAGCACGAAAGTGCCGCAGAAGTTCCGATATCCCTTCTTCACGGAGATGCTGTGGTACGTTCTTGCTCGCTATGTTCACACGCTACTGGGCCACTCACATCTGGAAGGTGAGGCCTCGTTGAGCGAGGATGAAATGGCTGCCCGTCCGCATACCCATCTTACGCACCACGAGCTCTTTGGACTGAAGGAGATCGTTATGTATTTGTACGATCTGCCGCCGCAGAAGAAAAATGTGCCCAGCCTGGTTCTGGATCCTGTGGCCCTGATCAAAGACGTCCGATCGTTGGTCGAGCGTCACTGCAAGGATCAGCAAGATCTCGCGATTACTGGCGTGTCAGTGTTAAAGTCGCCACCAGGATCGCTGCCCCCCTTCTTGTTGTATGATCGCACACGCGTGAAACAGGAGATAAAGCAGGAAATTGCACGCAAGAATGCAGAGGTAATACGGGAACAACAGCAATTGGAGGCGGGCAGGGCCAGGGAGGCCGAATCGGATACATCTCAATCCACTGGAGTGGGATCAGTCATCGGAATGGGGGCCGGAGTCGAGTACAGTAACGGAGTTATGAAGAAGGAGCAATTGGAGAACGGTAGCGGAGTAACAGTTGGCGGGCACGGATCACAGCCAGAGGCCACCTTTGCCCTGCCCACCGATACGCTTAAGTATCGCCCACCCAAGAAAATGCATTTGGCCACGGCGTTGGTGGCAGCCGCTGCAAGCAGCAGCTCTGGAGGAGGCGGACCAGTTGCAGGAGTGGGAGGATCCGCGGTGGTGGGAAGCAGCCATAGTCCTACCGGCGGAGGAGTGGGCCCAGTCACAGGAGCAGGCGGTGCTATTAGTGTGATTGCCACCAGCTCCAGCTACATTGAAGGAGGACAAGTTGGAGGAATTCTCAACATGGACAATTGTCATTCTCCAGAAGGGGGTGGCGCTAAACTGTCTCCAAATCTTACCGGTACTGGACAACCAAGACGTCGCAGGACGCGCTGCAAGAACTGTGCCGCCTGCCAGCGCTCCGACTGCGGCACCTGTCCCTTCTGTATGGATATGGTTAAGTTTGGTGGACCTGGTCGTGCCAAGCAAACGTGCATGATGCGACAATGTCTATCGCCAATGCTGCCGGTTACAGCGCAGTGTGTTTACTGTCATCTGGATGGGTGGCGTCAGACACCAGTCTCTCCGCAGACCAAGCAACTGGCTTCCGCCGATGGGCCCTCCGCTCTAATGGAGTGTTCCGTGTGCTACGAGATCGCCCACCCGGACTGTGCTCTCTCGCAGTTAGATGGCACAGAGGATGCGGCGGACGCCAAGGGAATCGTAAATGAAGATCTGCCAAACAGTTGGGAGTGTCCCAGCTGCTGCCGCTCTGGCAAAAACTATGACTATAAGCCTCGCCATTTTCGAGCACGGCAAAAGTCCTCCGAAGTGCGTCGCGTTTCTGTTTCCCATGGTCAAGGAGGCGCCGAAGGCCACGCGGATGGAAATACATTGCTGCCGCCCCCGGTGGGCCAGTATAATGACTTTGTCTTCACCAGTGAGTCGGAAATGGAATCGGGTACTGTCAGTGGCCACATGACACATTGGAAACACGGAATGAAGCGCCACCATCAGCTGGAGGTTAAAACGGAGCGAAATAATAGCTGCGACACCCCATCTCCCGGCATTTCACCAAATGCCATTGGCGGCGACTCCAAAGTAGGAAAGCGGCGTAAGAGCGACGACGGAACGAGCGTTAGTAGCAGCATGCACGAGAGTAATGACGCCCCATGTGGCTCTTCGGCGGAGGGAGCAGGTGGAGCGGGAACTGCAAATGTATCCACTAATCAGTGGAGTGGCAGTGGCGGCGGAGGTGGTTCCCGCAAGAAGAACTCAATACGATCACAGCTGGCCCAGCAAATGCTGAACTCGTCGACCCGAGTCCTCAAGAAACCCCAATATGTCGTGCGGCCAGCAAGTGGAACCGGTTCGTCTTCGTCCAGTGGAAATGGAGGTAGCGCATCCGCCACCAACGGAATCAGCAATGGCAGCAATCAAAGCGGTGCAAACTCCTGTGGAGCTGGCAACGGCGAGCGAGGAACCAATAACGGAGGATTGAGCGGCTCAAACGGCTTGGGCAATCAGCATTACAGTTCATCACAAAATCTGGCGTTGGACCCAACTGTGCTGAAGATCATATTTCGTTACCTTCCGCAGGACACGCTGGTTACCTGTTGCTCAGTATGTAAGGTATGGTCGAACGCAGCGGTCGATCCCGATTTGTGGAAGAAAATGAATTGCTCGGAGCACAAGATGTCAGCATCACTTTTGACAGCGATTGTGCGCAGGCAGCCGGAGCATCTTATTTTGGACTGGACGCAGATTGCCAAGAGGCAGTTGGCGTGGCTGGTGGCTCGCCTCCCGGCGCTCAAGAATCTCTCGCTGCAAAACTGTCCCATCCAGGCAGTGTTGGCACTGCACACCTGCCTTTGTCCACCGCTTCAAACTCTGGATCTCAGCTTTGTGAGAGGATTGAACGATGCTGCAATAAGGGACATCCTTTCACCTCCAAAGGATTCGCGACCTGGCTTAAGTGACTCGAAGACGCGTCTAAGGGATCTTAAAGTAATGAAGCTGGCCGGAACAGATATCTCCGATGTGGCTGTGCGCTATATCACGCAGTCGTTACCGTATCTGCGGCATCTGGATCTCTCCTCCTGCCAACGAATCACGGATGCGGGCGTGGCACAAATAGGAACCTCCACCACAGCCACCGCTCGTCTCACGGAGCTTAATCTGAGCGCCTGCAGGCTTGTGTCTGAGAACGCTCTGGAGCACTTGGCCAAGTGCGAAGGTCTCATCTGGCTGGACCTGCGCCATGTGCCCCAGGTCAGCACCCAGTCGGTGATTCGCTTTGCAAGCAACTCCAAGCATGATCTTTGCGTCAGAGACATCAAGCTGGTAGAGCGAAGGCGGAGGAACTCGACGACAGCAAACCGAAGCTGGCACCACGAC

CDS AA Sequence2

MSTAVETGSSPAKSNSNNSSSGGNNNNGNGNLSPNAKGVQRRQLRERKQRKLYLEEWSLGDEDGEGTRGFSVAEKLESSKFAQAGMVREMRGCDLTVAFLQQHGFNIPLLFRDKAGLGLRMPDPQEFTVNDVRLCVGSRRLLDVMDVNTQKNLQMTMKEWQQYYDSPQKDRLLNVISLEFSHTRLDRFVQSPEIVRQIDWVDVVWPKQLKDAQREGTNLLGGMMYPKVQKYCLMSVKNCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGKQADIFFGDTVEKCARVYLTAGNTFFIPTGWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDSTKVPQKFRYPFFTEMLWYVLARYVHTLLGHSHLEGEASLSEDEMAARPHTHLTHHELFGLKEIVMYLYDLPPQKKNVPSLVLDPVALIKDVRSLVERHCKDQQDLAITGVSVLKSPPGSLPPFLLYDRTRVKQEIKQEIARKNAEVIREQQQLEAGRAREAESDTSQSTGVGSVIGMGAGVEYSNGVMKKEQLENGSGVTVGGHGSQPEATFALPTDTLKYRPPKKMHLATALVAAAASSSSGGGGPVAGVGGSAVVGSSHSPTGGGVGPVTGAGGAISVIATSSSYIEGGQVGGILNMDNCHSPEGGGAKLSPNLTGTGQPRRRRTRCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQTCMMRQCLSPMLPVTAQCVYCHLDGWRQTPVSPQTKQLASADGPSALMECSVCYEIAHPDCALSQLDGTEDAADAKGIVNEDLPNSWECPSCCRSGKNYDYKPRHFRARQKSSEVRRVSVSHGQGGAEGHADGNTLLPPPVGQYNDFVFTSESEMESGTVSGHMTHWKHGMKRHHQLEVKTERNNSCDTPSPGISPNAIGGDSKVGKRRKSDDGTSVSSSMHESNDAPCGSSAEGAGGAGTANVSTNQWSGSGGGGGSRKKNSIRSQLAQQMLNSSTRVLKKPQYVVRPASGTGSSSSSGNGGSASATNGISNGSNQSGANSCGAGNGERGTNNGGLSGSNGLGNQHYSSSQNLALDPTVLKIIFRYLPQDTLVTCCSVCKVWSNAAVDPDLWKKMNCSEHKMSASLLTAIVRRQPEHLILDWTQIAKRQLAWLVARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPGLSDSKTRLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLSACRLVSENALEHLAKCEGLIWLDLRHVPQVSTQSVIRFASNSKHDLCVRDIKLVERRRRNSTTANRSWHHD

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.