Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Hrb98DE (FBgn0001215) cofactor
 
(-0.39/-3.48/0.70)

Factor activity

H. sapiens orthologues1

HNRNPA1 (HGNC:5031, ENSG00000135486), HNRNPA1L2 (HGNC:27067, ENSG00000139675), HNRNPA3 (HGNC:24941, ENSG00000170144), HNRNPA2B1 (HGNC:5033, ENSG00000122566)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGGTGGTCACGACAACTGGAACAATGGTCAAAATGAGGAGCAAGATGACTCCATCACCGAGCCGGAGCATATGCGCAAGCTGTTCATCGGTGGCTTGGACTACCGTACCACCGACGAGAACCTGAAGGCTCACTTCGAGAAATGGGGCAACATCGTGGACGTGGTGGTCATGAAGGATCCGCGCACAAAGCGTTCCCGCGGATTCGGATTCATCACCTATTCCCACTCGAGCATGATTGATGAGGCGCAAAAGTCGCGTCCCCACAAGATCGACGGTCGAGTGGTGGAGCCCAAGCGCGCCGTTCCCCGTCAGGACATTGATTCCCCGAATGCCGGAGCTACCGTAAAGAAGCTCTTTGTTGGCGCCCTCAAGGACGACCATGATGAGCAGAGCATCCGCGACTACTTCCAGCACTTTGGCAACATCGTCGACATCAACATCGTCATCGACAAGGAGACTGGCAAGAAACGCGGATTCGCCTTCGTCGAGTTCGACGACTACGATCCCGTGGACAAAGTTGTGTTGCAAAAGCAGCATCAGCTGAATGGCAAAATGGTGGACGTAAAGAAGGCCTTGCCCAAGCAGAATGACCAACAGGGAGGTGGCGGAGGACGCGGTGGTCCGGGAGGTCGTGCCGGTGGAAACCGCGGAAACATGGGCGGTGGAAACTACGGCAACCAGAATGGTGGCGGCAACTGGAACAACGGTGGCAACAACTGGGGCAACAACCGCGGGGGTAACGACAACTGGGGCAACAACAGCTTCGGTGGTGGCGGCGGCGGCGGTGGTGGTTATGGCGGTGGCAACAACAGCTGGGGCAATAACAATCCGTGGGACAATGGCAATGGAGGCGGCAACTTTGGAGGCGGCGGCAACAATTGGAACAATGGTGGCAATGATTTTGGAGGCTACCAGCAGAACTATGGCGGCGGTCCGCAGCGAGGTGGCGGCAACTTCAACAACAATCGCATGCAGCCCTACCAAGGAGGTGGTGGATTCAAAGCAGGCGGTGGCAATCAAGGCAACTATGGCGGAAACAATCAGGGCTTCAATAACGGTGGCAACAACCGCAGATAT

CDS AA Sequence2

MGGHDNWNNGQNEEQDDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNRRY

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.