Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Snr1 (FBgn0011715) cofactor
 
(-0.41/-3.02/0.05)

Factor activity

Additional information

Snr1 [FlyBase] | Snr1 [FlyMine] | Snr1 [BDGP]

H. sapiens orthologues1

SMARCB1 (HGNC:11103, ENSG00000099956)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGCACTGCAGACATACGGGGACAAGCCGGTGGCCTTCCAGCTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTGGGCAACTACATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGGAATGACCCGCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGTCCGGCCTCAGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCCGTAGAGGTGGACGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGTCTCCGTGAACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGAAGCAGCCACAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCAGTGCCACAGGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGTTCGCACATTCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGGAGAATGCGGCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAGCTAGAGGGTCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAGCATGATTACTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACCTCAATCCCCTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAGATCGAAGCCTTTCCCAACGATCCCCCCATCCTCGAGGAGACCTGCGACCAGCGGGTCATTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCGACCAGGTCGAGTGGGACATGTCCGAGAAGAACAACAACCCCGAGGAGTTTGCCATTAAACTCTGTGCGGAATTGGGATTGGGAGGAGAGTTTGTTACGGCCATTGCCTACAGCATTAGGGGTCAGCTATCGTGGCACTGTCGAACGTACGCCTTCAGCGAGGCCCCTCTATCAACGATTGATGTGCCCTTCCGGAATCCCAGCGACGCTGACGCATGGGCGCCATTCCTAGAGACGCTTACCGACGCCGAAATGGAGAAGAAAATCCGCGACCAGGACCGCAACACGCGCAGAATGCGACGACTGGCCAATACCACAACTGGTTGG

CDS AA Sequence2

MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLAESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKKQPQYVPTMPNSSHLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLENAAQKECLVPIRLDMELEGQKLRDTFTWNKNESMITPEQFAEVLCDDLDLNPLPFVPAIAQAIRQQIEAFPNDPPILEETCDQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGGEFVTAIAYSIRGQLSWHCRTYAFSEAPLSTIDVPFRNPSDADAWAPFLETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.