Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Bap60 (FBgn0025463) cofactor
 
(-1.00/-4.29/-0.05)

Factor activity

Additional information

Bap60 [FlyBase] | Bap60 [FlyMine] | Bap60 [BDGP]

H. sapiens orthologues1

SMARCD1 (HGNC:11106, ENSG00000066117), SMARCD3 (HGNC:11108, ENSG00000082014), SMARCD2 (HGNC:11107, ENSG00000108604)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTCGCAACGCTTTGCACCTGGCCAAGCGCCGGTGCAGTCGCGTTATCAGCCACCACCACCGGCGCCCGGCATGCGTCCCTATCCGCCGCCAGGCGCCTCTTTTCCACCGCGCGGGTTTCCCCTGCATCCGAACACTACTCAACCTGTTCCCGGCACGGCGAACGTGGCCGGGGTACCGGGAGTTCCTGGAGTACCCGGCGTACCGGGACCATCGCTACTGCAGCGCGCCGCCCAACAGCCGGGCTTTCAGAGCAGCCTTCGCGGTACTGGAGCCGGAGGTGGCGGTGTTGGATCCGGCGGAGGCAGCAAGAGGTCAAATGAATCCCGCAGTTTGGGTGGCGGTGGTAGCAAAAGTGATTTTGCGACGGCCAAAAAGAAAAAGAAGCTGGCCGAAAAGATACTGCCGCAGAAGGTGCGGGATCTGGTGCCCGAATCGCAAGCGTACATGGATCTGCTGACGTTTGAGCGAAAACTGGATGCCACCATAATGCGCAAACGTCTGGACATCCAGGAGGCCCTCAAGCGCCCCATGAAGCAGAAGCGCAAGCTGCGCATCTTCATCTCGAACACATTCTATCCCAGCAAGGAGCCCACAAATGATGGCGAGGAGGGCGCCGTTGCCTCTTGGGAATTGCGGGTGGAGGGTCGCCTGTTAGAGGATGGCAAGGGCGATCCCAATACAAAGATCAAACGCAAGTTTTCGTCGTTTTTCAAGTCGCTGGTTATCGAGCTGGATAAGGAACTGTACGGTCCGGACAACCATCTGGTCGAGTGGCATCGCACTCACACCACCCAGGAGACGGACGGGTTCCAGGTGAAGCGGCCGGGCGATCGCAATGTGCGCTGCACCATCCTCCTGCTGCTTGACTACCAGCCGCTGCAGTTCAAGCTGGACCCGCGACTCGCCAGGTTGCTGGGCGTACACACACAGACCAGGCCGGTGATCATATCCGCCCTGTGGCAGTACATCAAGACGCACAAGCTACAGGATGCCCACGAGCGGGAGTACATCAATTGCGACAAGTATCTGGAGCAGATATTCAGTTGCCAGCGGATGAAGTTTGCCGAGATACCGCAACGCCTCAATCCGCTGCTGCATCCGCCCGATCCGATTGTGATCAATCATTTCATTGAGAGCGGTGCAGAGAACAAGCAGACTGCCTGCTACGACATCGATGTGGAGGTGGATGATACGCTCAAAAACCAGATGAACAGCTTCCTGATGAGCACTGCGAGCCAACAGGAGATCCAGGGGCTGGACACCAAGATCCACGAGACGGTGGACACGATCAACCAGATGAAGACGAACAGGGAGTTCTTCCTAAGCTTCGCCAAGGATCCACAAATGTTTATTCATCGCTGGATCATCAGTGAGACGAGGGATTTGAAGCTGATGACCGATGTAGCTGGCAATCCGGAGGAGGAGCGTCGGGCGGAGTTCTATTACCAGCCATGGACGCACGAGGCCGTTTCGCGCTACTTCTTCACCAAGGTCAACCAGAAGCGGGCCGAATTGGAGCAGGCGCTGGGCATACGCAACGGC

CDS AA Sequence2

MSQRFAPGQAPVQSRYQPPPPAPGMRPYPPPGASFPPRGFPLHPNTTQPVPGTANVAGVPGVPGVPGVPGPSLLQRAAQQPGFQSSLRGTGAGGGGVGSGGGSKRSNESRSLGGGGSKSDFATAKKKKKLAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIESGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAGNPEEERRAEFYYQPWTHEAVSRYFFTKVNQKRAELEQALGIRNG

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.